ExperimentSetReplicate

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ExperimentSet4DNESY4L3IVU
released
View JSON

input for TBX5 ChIP-seq on wild-type WTC-11 iPSC cells differentiated for 11 days to atrial cardiac myocytes - the pulldown was done using an engineered TAP-tagged TBX5 and pulldown of the biotinylated protein with Streptavidin beads.

   December 19th, 2024 at 8:23pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXQFDR8D1
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI7TF9Z1F
read positions (bed)
1.35 GB
Experiment
4DNEX6D4UY39
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIECHQ68W
read positions (bed)
1.71 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXQFDR8D1
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI7TF9Z1F
0.88
0.88
82.97m
Experiment
4DNEX6D4UY39
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIECHQ68W
0.84
0.84
104.7m