ExperimentSetReplicate

ExperimentSet4DNESXX38FO6
released
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2 biological replicates of Hi-C on G1E-ER4 cells in prometaphase

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESXX38FO6
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI2SEN8T9
414.05m
69.066%
25.821%
5.114%
Experiment
4DNEXLBIS33F
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIMTKRDZ5
221.59m
64.444%
30.23%
5.325%
Experiment
4DNEXS7FWODQ
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIAK8245O
192.47m
74.386%
20.744%
4.87%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESXX38FO6
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIY5IVS57
1000; 2000; 5000; 10000; 25000; 50000; 100000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLBIS33F
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIHJ6K3CT
371.37m
10.525%
21.891%
2.586%
5.331%
0.098%
Experiment
4DNEXS7FWODQ
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI8JJ7F6E
293.4m
7.448%
21.194%
2.186%
3.573%
0.098%