ExperimentSetReplicate

ExperimentSet4DNESXSGHXDQ
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 2 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESXSGHXDQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFICDLO3SD
61.34m
50.282%
13.511%
36.207%
Experiment
4DNEX7OYMHFJ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFILGFWO7L
61.34m
50.282%
13.511%
36.207%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX7OYMHFJ
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFI8F8HWTY
126.67m
12.94%
24.389%
14.242%
0.004%
0.186%