ExperimentSetReplicate

ExperimentSet4DNESX5HHBRP
released
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DNase Hi-C on RUES2 iPSC cells - differentiation day 2 mesoderm

   September 19th, 2022 at 4:03pm
Source Publication
Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation.
Alavattam KG, Mitzelfelt KA, et al., Stem cell reports 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
RUES2 differentiated to mesoderm
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESX5HHBRP
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI2849Y4V
210.18m
29.056%
52.568%
18.377%
Experiment
4DNEXY9AKMVH
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 differentiated to mesoderm with DNaseI
File
Contact List-replicate (pairs)
4DNFIUM3G3AS
102.7m
28.098%
54.026%
17.876%
Experiment
4DNEXAIR7YJB
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 differentiated to mesoderm with DNaseI
File
Contact List-replicate (pairs)
4DNFIXBHYYOM
107.49m
29.97%
51.175%
18.855%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESX5HHBRP
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITDFDM7G
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXY9AKMVH
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 differentiated to mesoderm with DNaseI
File
Alignments (bam)
4DNFIF914I2G
148.19m
11.727%
11.301%
3.911%
3.761%
0.188%
Experiment
4DNEXAIR7YJB
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 differentiated to mesoderm with DNaseI
File
Alignments (bam)
4DNFIS23SQL5
153.38m
11.56%
11.524%
3.254%
3.585%
0.204%