ExperimentSetReplicate

ExperimentSet4DNESWX32ZCG
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Histone modification H3K4me3 ChIP-seq

   January 31st, 2018 at 4:04am

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFFc6 (Tier 1)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me3

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXYOW7TCB
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K4me3 on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFI7R6RWIN
0.68
0.66
12.24m
Experiment
4DNEXBMMVBQW
Bio Rep 1, Tec Rep 2
ChIP-seq against H3K4me3 on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIALKPFR2
0.81
0.8
11.15m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESWX32ZCG
Multiple Experiments
File
Peaks (bigbed)
4DNFIJOK1BWR
25.8k
1.01
1.01
0.29