ExperimentSetReplicate

ExperimentSet4DNESWT26U92
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 2 days to atrial cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXQ9O2LOV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFI36KDML8
44.04m
38.41m
Experiment
4DNEX8NGKWZU
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFI1IINXI4
44.6m
38.42m
Experiment
4DNEX3INSKIK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIVZUHJLI
39.48m
34.38m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXQ9O2LOV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFI24EGEDD
49.65m
1.55k
Experiment
4DNEX8NGKWZU
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIM2DZWD8
48.89m
3.1k
Experiment
4DNEX3INSKIK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFI9423RQ2
43.16m
2.94k