ExperimentSetReplicate

ExperimentSet4DNESWNF3Y23
released

2 biological replicates of Hi-C on G1E-ER4 cells in late G1 phase

   March 3rd, 2020 at 8:07pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESWNF3Y23
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINFUFH1T
476.67m
46.561%
36.234%
17.206%
Experiment
4DNEXT15BABL
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFI459N6LM
227.77m
40.908%
43.87%
15.221%
Experiment
4DNEXUNJYYOW
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIVIMVUT2
248.89m
51.733%
29.245%
19.022%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXT15BABL
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIRU495DS
393.34m
12.312%
21.006%
4.022%
4.752%
0.097%
Experiment
4DNEXUNJYYOW
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIQKTJZC3
383.17m
8.11%
20.435%
2.669%
3.829%
0.109%