ExperimentSetReplicate

ExperimentSet4DNESWLWNWV8
released

2 biological replicates of Hi-C on G1E-ER4 cells in mid-G1 phase

   March 3rd, 2020 at 8:07pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESWLWNWV8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIKGPMCIE
400.47m
57.634%
31.881%
10.485%
Experiment
4DNEXGDR6FZF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIU1X4LHS
191.58m
57.312%
33.188%
9.5%
Experiment
4DNEX9K9WDJX
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIZDV3W7X
208.89m
57.929%
30.683%
11.388%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXGDR6FZF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFICP81OJS
309.77m
12.454%
18.249%
2.089%
5.364%
0.088%
Experiment
4DNEX9K9WDJX
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI1F512QY
322.22m
8.712%
20.121%
2.409%
3.93%
0.102%