ExperimentSetReplicate

ExperimentSet4DNESWH9D5F9
released
View JSON

Input control for CTCF ChIP-seq on WT hTert-RPE-1

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
RPE-hTERT (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXQTHBACN
Bio Rep 1, Tec Rep 1
ChIP-seq on RPE-hTERT (Tier 2)
File
4DNFI5NI7PBN
read positions (bed)
1.77 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXQTHBACN
Bio Rep 1, Tec Rep 1
ChIP-seq on RPE-hTERT (Tier 2)
File
Read Positions (bed)
4DNFI5NI7PBN
0.74
0.73
105.77m