ExperimentSet4DNESW9GVC97
released
May 31st, 2023 at 3:11pm
Source Publication
Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions.
Luo R, Yan J, et al., Nature genetics 2023
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
in vitro differentiated cells
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: Arima - A1, A2
8 Processed Files
Experiment
File
File Type
File Size
Notes
Experiment
4DNEXJCUBTM2
Bio Rep 1, Tec Rep 1
in situ Hi-C on SOX17-eGFP iCAS9 HUES8 differentiated to definitive endoderm with Arima - A1, A2Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXJCUBTM2
Bio Rep 1, Tec Rep 1
in situ Hi-C on SOX17-eGFP iCAS9 HUES8 differentiated to definitive endoderm with Arima - A1, A2Experiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXJCUBTM2
Bio Rep 1, Tec Rep 1
in situ Hi-C on SOX17-eGFP iCAS9 HUES8 differentiated to definitive endoderm with Arima - A1, A2