ExperimentSetReplicate

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ExperimentSet4DNESW8HXWB8
released
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ATAC-seq on HEK293 cells - no-light control Cas9-AluGG pcRNA (light-deactivatable CRISPR)

   February 14th, 2022 at 3:09am
Source Publication
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
Zou RS, Marin-Gonzalez A, et al., Nature cell biology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HEK293 (Tier 2)
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
Transient Transfection
Assay Details 
None

5 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESW8HXWB8
Multiple Experiments
File
4DNFI4KO48P7
peaks (bigbed)
12.36 MB
File
4DNFIV2E9EIE
conservative peaks (bigbed)
12.26 MB
File
4DNFI2XYU2D5
signal fold change (bw)
2.23 GB
Experiment
4DNEXTKMNQYO
Bio Rep 1, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
4DNFIVI8ZGA6
read positions (bed)
885.22 MB
Experiment
4DNEXYR9QBVB
Bio Rep 2, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
4DNFIRIWKVOU
read positions (bed)
1.02 GB

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXTKMNQYO
Bio Rep 1, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIVI8ZGA6
6.05%
0.9
0.9
55.13m
Experiment
4DNEXYR9QBVB
Bio Rep 2, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIRIWKVOU
6.32%
0.93
0.93
65.08m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESW8HXWB8
Multiple Experiments
File
Peaks (bigbed)
4DNFI4KO48P7
221.17k
1.01
1.05
0.27