ExperimentSetReplicate

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ExperimentSet4DNESW2MTVKJ
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 6 days to atrial cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to primitive cardiac myocyte
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESW2MTVKJ
Multiple Experiments
File
4DNFIZ25VRVK
contact list-combined (pairs)
16.29 GB
File
4DNFIWZYSI2D
contact matrix (hic)
4.77 GB
File
4DNFI4N2S9QW
contact matrix (mcool)
3.18 GB
File
4DNFIB7CR13S
compartments (bw)
202.36 kB
File
4DNFICOOQGBI
boundaries (bed)
163.45 kB
File
4DNFIQG21KO6
insulation score-diamond (bw)
7.87 MB
Experiment
4DNEXLU6FLCA
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with DdeI and DpnII
File
4DNFIDOYJ591
alignments (bam)
130.79 GB
File
4DNFIHY87SLB
contact list-replicate (pairs)
8.34 GB
Experiment
4DNEX3RDGNW9
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with DdeI and DpnII
File
4DNFIQQJHE1L
alignments (bam)
148.06 GB
File
4DNFI427TZH3
contact list-replicate (pairs)
9.3 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESW2MTVKJ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIZ25VRVK
981.62m
27.432%
57.066%
15.502%
Experiment
4DNEXLU6FLCA
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIHY87SLB
489.88m
27.963%
55.613%
16.424%
Experiment
4DNEX3RDGNW9
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFI427TZH3
548.57m
27.42%
56.497%
16.082%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESW2MTVKJ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI4N2S9QW
None