ExperimentSetReplicate

ExperimentSet4DNESW1HL87C
released
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in situ Hi-C on primary cardiomyocytes from the left ventricle - donor 01160

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left ventricle
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESW1HL87C
Multiple Experiments
File
Contact List-combined (pairs)
4DNFII5KPDZY
736.55m
38.33%
26.072%
35.598%
Experiment
4DNEX5WAFFCH
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFIV27V1HH
325.96m
39.478%
25.527%
34.995%
Experiment
4DNEXOZ8JF8U
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFIJ5J6JIL
410.58m
37.419%
26.504%
36.077%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESW1HL87C
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI25R51IO
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX5WAFFCH
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFIE6JZ2DS
562.68m
11.715%
17.74%
6.423%
6.191%
0.308%
Experiment
4DNEXOZ8JF8U
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFI6UYECNZ
757.71m
13.239%
18.342%
7.678%
6.554%
0.23%