ExperimentSetReplicate

ExperimentSet4DNESVR7L225
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - Prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESVR7L225
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI4S1MEP9
73.55m
53.631%
13.22%
33.148%
Experiment
4DNEXKDS1D8P
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI12GFBNW
73.55m
53.631%
13.22%
33.148%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKDS1D8P
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIHDM9O6C
145.12m
12.522%
23.269%
13.518%
0.005%
0.172%