ExperimentSetReplicate

ExperimentSet4DNESVF6WL86
released

Replicate of GAM on mouse dopaminergic neurons from midbrain ventral tegmental area in wild type C57Bl/6NCrl background mouse 14 days after cocaine injection

   February 9th, 2024 at 8:37pm
Source Publication
A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons.
Szabo D, Franke V, et al., bioRxiv : the preprint server for biology 2024

Batch Quality Information for GAM libraries (NP fastq files) in this Dataset  


NOTE The excel workbook downloadable from this page contains information that can be used to evaluate the quality of the GAM libraries linked to this dataset. The workbook consists of 5 sheets. The first provides descriptions and terms used in the remaining sheets and highlights those that may be used to evaluate quality of the libraries. The remaining sheets provide information on each individual GAM library linked to the dataset indicated by the name of the sheet and by the dataset_acc column in each sheet. Each library corresponds to a single FastQ file that can be identified using the provided file_accession in the first column.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

837 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSSJIRYM8
Bio Replicate 1
Experiment
4DNEXW57SFU1
Tech Replicate 1
File
166.64 MB
35-75
  Pass
3.67m
File
53.26 MB
35-75
  Pass
1.15m
File
168.28 MB
35-75
  Pass
3.76m
File
142.46 MB
35-75
  Pass
3.14m
File
123.02 MB
35-75
  Pass
2.69m
File
140.01 MB
35-75
  Pass
3.06m
File
129.19 MB
35-75
  Pass
2.81m
Show 100 More Files (Total 398 Files to Show)
Biosample
4DNBSVU821O5
Bio Replicate 2
Experiment
4DNEXMFQ1XJV
Tech Replicate 1
File
112.04 MB
35-75
  Pass
2.61m
File
98.21 MB
35-75
  Pass
2.3m
File
101.26 MB
35-75
  Pass
2.43m
File
76.32 MB
35-75
  Pass
1.77m
File
100.2 MB
35-75
  Pass
2.35m
File
111.12 MB
35-75
  Pass
2.62m
File
146.23 MB
35-75
  Pass
3.57m
Show 100 More Files (Total 425 Files to Show)