ExperimentSetReplicate

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ExperimentSet4DNESVCDY1EN
released
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Replicates of RNA-seq on wild-type Patski cells with mock treatment

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

8 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXIRI7NS3
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIKEGGLEK
read positions (bam)
8.21 GB
File
4DNFI9HB1PT8
read counts (bw)
199.62 MB
File
4DNFIHD54WAR
gene expression (tsv)
11.59 MB
File
4DNFI6AZPJHV
isoform expression (tsv)
23.63 MB
Experiment
4DNEX2M5XCFM
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
4DNFIUCAUO6G
read positions (bam)
8.44 GB
File
4DNFIYB9Z2H9
read counts (bw)
199.43 MB
File
4DNFILTYGM8K
gene expression (tsv)
11.59 MB
File
4DNFITDSMFEW
isoform expression (tsv)
23.63 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXIRI7NS3
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIKEGGLEK
130.54m
112.54m
Experiment
4DNEX2M5XCFM
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIUCAUO6G
132.69m
114.45m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXIRI7NS3
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIHD54WAR
102.32m
54.66k
Experiment
4DNEX2M5XCFM
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFILTYGM8K
103.63m
62.69k