ExperimentSetReplicate

ExperimentSet4DNESVAMUDHA
released

GAM on H1-ESC cells - high quality data using improved WGA protocol

   March 13th, 2024 at 10:51am

Batch Quality Information for GAM libraries (NP fastq files) in this Dataset  


NOTE The excel workbook downloadable from this page contains information that can be used to evaluate the quality of the GAM libraries linked to this dataset.

The workbook consists of 2 sheets. The first provides descriptions and terms used in the second and highlights those that may be used to evaluate quality of the libraries. The second sheet provides information on each individual GAM library linked to this dataset.
Each library corresponds to a single FastQ file that can be identified using the provided File_accession or Sample_ID in the first 2 columns.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

384 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBS46FF9D9
Bio Replicate 1
Experiment
4DNEXID3TT9U
Tech Replicate 1
File
384.73 kB
75
  Pass
7.58k
File
110.02 MB
75
  Pass
2.4m
File
80.1 MB
75
  Pass
1.72m
File
160 MB
75
  Pass
3.46m
File
81.78 MB
75
  Pass
1.75m
File
75.34 kB
75
  Pass
1.16k
File
95.45 MB
75
  Pass
2.06m
Show 100 More Files (Total 185 Files to Show)
Biosample
4DNBSB45FJC1
Bio Replicate 2
Experiment
4DNEXWZU4DRL
Tech Replicate 1
File
69.78 kB
35-75
  Pass
1.03k
File
101.87 MB
35-75
  Pass
2.76m
File
16.7 kB
35-75
  Pass
173
File
128.7 MB
35-75
  Pass
3.13m
File
85.69 kB
35-75
  Pass
2.13k
File
167.56 MB
35-75
  Pass
3.74m
File
56.89 MB
35-75
  Pass
1.71m
Show 100 More Files (Total 185 Files to Show)