ExperimentSetReplicate

ExperimentSet4DNESV84QXGA
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Chromatin tracing (ORCA) of a 150-Mb region on chr3 in mESC CTCF-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Microscope configuration  

The experiments associated with this study are derived from either 33ea326f-a557-4457-becf-55bc860c4bdf or 4fc82c6a-a9cd-43e1-aee8-36db3174b409 microscopes

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: 150-Mb chr3 (mouse)
Channel
Path
 
ch03
150-Mb chr3 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
150-Mb chr3 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

3 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX2CVA7KO
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIR52SIYN
FOF-CT - DNA-spot/trace core (csv)
3.35 MB
File
4DNFI3WJPZTU
FOF-CT - spot quality (csv)
971.6 kB
File
4DNFI9EOAVVI
FOF-CT - trace data (csv)
42.9 kB