ExperimentSetReplicate

ExperimentSet4DNESV6NHHCO
released
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in situ Hi-C on primary cardiomyocytes from the left atrium - donor 01137

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left atrium
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESV6NHHCO
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVA2KE25
758.98m
40.371%
24.206%
35.423%
Experiment
4DNEXXQWE2MF
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFIXMMT8R5
381.98m
39.435%
24.913%
35.653%
Experiment
4DNEXZH69JB2
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFICOCFM2N
377m
41.319%
23.491%
35.191%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESV6NHHCO
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIO88ACBQ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXXQWE2MF
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFIC8LQKCJ
678.39m
13.74%
19.54%
4.414%
5.999%
0.235%
Experiment
4DNEXZH69JB2
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFI5GFPSE3
665.76m
13.349%
20.054%
4.566%
5.406%
0.22%