ExperimentSetReplicate

ExperimentSet4DNESV699W8U
released
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Replicates of input control ChIP-seq on Sox2 tagged F123 ES cells with 15 synthetic non-boundary CTCF sites in between Sox2 and its SE

   August 13th, 2020 at 6:16pm
Source Publication
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains.
Huang H, Zhu Q, et al., Nature genetics 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Experiment Type(s) 
ChIP-seq
Modification Type 
RMCE
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX948JUMI
Bio Rep 1, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
4DNFI2387Q44
read positions (bed)
22.38 MB
Experiment
4DNEXKKTEL8O
Bio Rep 2, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
4DNFI28SATLZ
read positions (bed)
69.06 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX948JUMI
Bio Rep 1, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
Read Positions (bed)
4DNFI2387Q44
0.88
0.87
1.34m
Experiment
4DNEXKKTEL8O
Bio Rep 2, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
Read Positions (bed)
4DNFI28SATLZ
0.9
0.9
4.12m