ExperimentSetReplicate

ExperimentSet4DNESUZF6RYP
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 17th, 2018 at 4:41pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:107482705-107645471 region, GRCh38:1:63059760-63224942 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:107482705-107645471 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:63059760-63224942 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESUZF6RYP
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXVW1HLV6
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFI9KU5YNE
loci distances (txt)
116.59 kB
Experiment
4DNEXTIHSBUJ
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIZYV3NOU
loci distances (txt)
42.64 kB
Experiment
4DNEX7TY6MT7
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFIV1QMQ2K
loci distances (txt)
113.67 kB
Experiment
4DNEXL51JR6L
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIJSEC7F6
loci distances (txt)
168.54 kB
Experiment
4DNEXN61YXF3
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIJN7D5UH
loci distances (txt)
94.52 kB
Experiment
4DNEXQ6IOADF
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFICZLL1J8
loci distances (txt)
155.7 kB