ExperimentSetReplicate

ExperimentSet4DNESUYU9VSU
released
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in situ Hi-C on primary cardiomyocytes from the left ventricle - donor 01137

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left ventricle
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUYU9VSU
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7K16HOA
829.83m
40.845%
25.825%
33.33%
Experiment
4DNEXMIDACIS
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFI9RQJ8IK
427.45m
40.509%
27.563%
31.928%
Experiment
4DNEXQMOEZL7
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFIGU8Z277
402.38m
41.202%
23.979%
34.82%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESUYU9VSU
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITF7RS3P
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXMIDACIS
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFI64YSDVU
819.69m
15.852%
19.573%
5.301%
7.126%
0.206%
Experiment
4DNEXQMOEZL7
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFIBR476U7
741.89m
14.847%
19.755%
5.041%
6.119%
0.25%