ExperimentSet4DNESUWNG5PW
released
February 27th, 2024 at 5:25pm
Data Usage Guidelines
Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
primary cells
Experiment Type(s)
Modification Type
Crispr
Treatment Type
None
Assay Details
Enzyme: MboI
18 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEXM6F4QJU
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEX2B8D6NL
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXGCIE76K
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXNO6AVK1
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXEB4SOLE
Bio Rep 5, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXB3ZRUDN
Bio Rep 6, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXM6F4QJU
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEX2B8D6NL
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXGCIE76K
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXNO6AVK1
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXEB4SOLE
Bio Rep 5, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboIExperiment
4DNEXB3ZRUDN
Bio Rep 6, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 8 days old with MboI