ExperimentSetReplicate

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ExperimentSet4DNESUPRSR1D
released
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gH2AX ChIPseq on HEK293 cells - time 3h after Cas9-AluTA mgRNA delivery

   February 14th, 2022 at 3:03am
Source Publication
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
Zou RS, Marin-Gonzalez A, et al., Nature cell biology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HEK293 (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Transient Transfection
Assay Details 
Target: gamma H2A.X

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESUPRSR1D
Multiple Experiments
File
4DNFIMS9EOZ5
peaks (bigbed)
662.4 kB
File
4DNFIVH4GS48
conservative peaks (bigbed)
662.4 kB
File
4DNFIEFGO4B1
signal fold change (bw)
372.62 MB
Experiment
4DNEXA4BDVDC
Bio Rep 1, Tec Rep 1
ChIP-seq against gamma H2A.X on HEK293 (Tier 2)
File
4DNFIIN3NZ2A
read positions (bed)
190.42 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXA4BDVDC
Bio Rep 1, Tec Rep 1
ChIP-seq against gamma H2A.X on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIIN3NZ2A
0.98
0.98
11.49m