ExperimentSetReplicate

ExperimentSet4DNESUCQ2Q6H
released
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Dilution Hi-C on neurons from mice

   September 26th, 2019 at 6:43pm
Source Publication
Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Falk M, Feodorova Y, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
retinal neural layer
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUCQ2Q6H
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPFVOH5K
94.57m
25.349%
30.187%
44.464%
Experiment
4DNEXNEI7WTP
Bio Rep 1, Tec Rep 1
Dilution Hi-C on retinal neural layer with HindIII
File
Contact List-replicate (pairs)
4DNFIK3J4YCV
33.43m
19.013%
36.282%
44.705%
Experiment
4DNEX8346V8I
Bio Rep 2, Tec Rep 1
Dilution Hi-C on retinal neural layer with HindIII
File
Contact List-replicate (pairs)
4DNFIKCZXN3W
61.14m
28.814%
26.854%
44.332%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESUCQ2Q6H
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIYEYHJUX
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXNEI7WTP
Bio Rep 1, Tec Rep 1
Dilution Hi-C on retinal neural layer with HindIII
File
Alignments (bam)
4DNFILO5MBRC
140.07m
17.289%
24.905%
33.922%
0.015%
0.062%
Experiment
4DNEX8346V8I
Bio Rep 2, Tec Rep 1
Dilution Hi-C on retinal neural layer with HindIII
File
Alignments (bam)
4DNFIXTXJRH9
164.93m
18.342%
20.133%
24.44%
0.014%
0.065%