ExperimentSetReplicate

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ExperimentSet4DNESU1UBYVZ
released
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ChIP-seq in HCT116-RAD-mAC using antibody RNAPII treated with auxin-12h

   June 28th, 2024 at 5:23pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: RNA Pol II

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESU1UBYVZ
Multiple Experiments
File
4DNFIVEZHDMS
peaks (bigbed)
1.57 MB
File
4DNFI7I37Z8L
conservative peaks (bigbed)
1.57 MB
File
4DNFICHN1HP2
signal fold change (bw)
1.43 GB
Experiment
4DNEXDL65YN8
Bio Rep 1, Tec Rep 1
ChIP-seq against RNA Pol II on HCT116 (Tier 2)
File
4DNFIDAKVZ9J
read positions (bed)
1.05 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXDL65YN8
Bio Rep 1, Tec Rep 1
ChIP-seq against RNA Pol II on HCT116 (Tier 2)
File
Read Positions (bed)
4DNFIDAKVZ9J
0.75
0.76
64.13m