ExperimentSetReplicate

ExperimentSet4DNESTVIP977
released

Replicate Set of sciHi-C on HFFc6 cells - this Replicate Set is derived from experiments performed on a pooled mixture of either HFFc6 and H1-ESC cells (Bio replicate 1) or HFFc6 and GM12878 cells (Bioreplicate 2) and raw files will contain reads from both cell types. Barcode information needs to be used to obtain line specific reads. Processed files for this set will be specific to HFFc6 cells.

   February 5th, 2018 at 8:54pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

20 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBS1GBLRXS
Bio Replicate 1
Experiment
4DNEX6HS133B
Tech Replicate 1
Pair 1
13.65 GB
250
  Pass
68.17m
14.34 GB
250
  Pass
68.17m
Pair 2
14.89 GB
250
  Pass
73.84m
15.57 GB
250
  Pass
73.84m
Experiment
4DNEXOTPTHX8
Tech Replicate 2
Pair 1
7.54 GB
250
  Pass
39.27m
7.97 GB
250
  Pass
39.27m
Pair 2
26.6 GB
250
  Pass
128.84m
27.46 GB
250
  Pass
128.84m
Biosample
4DNBS7N3PYDM
Bio Replicate 2
Experiment
4DNEXTZ5222J
Tech Replicate 1
Pair 1
29.06 GB
250
  Pass
139.37m
29.67 GB
250
  Pass
139.37m
Pair 2
5.67 GB
250
  Pass
29m
5.97 GB
250
  Pass
29m
Pair 3
27.13 GB
250
  Pass
130.05m
27.85 GB
250
  Pass
130.05m
Experiment
4DNEX4QH6UPV
Tech Replicate 2
Pair 1
4.95 GB
250
  Pass
24.43m
5.16 GB
250
  Pass
24.43m
Pair 2
8.68 GB
250
  Pass
47.09m
9.48 GB
250
  Pass
47.09m
Pair 3
27.19 GB
250
  Pass
134.67m
28.59 GB
250
  Pass
134.67m