ExperimentSetReplicate

ExperimentSet4DNESTJ9FHDL
released
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input for TBX5 ChIP-seq on wild-type WTC-11 iPSC cells differentiated for 45 days to atrial cardiac myocytes - the pulldown was done using an engineered TAP-tagged TBX5 and pulldown of the biotinylated protein with Streptavidin beads.

   December 19th, 2024 at 8:23pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: None (Control)

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXXFFTLF2
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI7MY7TFA
read positions (bed)
787.05 MB
Experiment
4DNEX79VU135
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI2Z233OR
read positions (bed)
1.29 GB
Experiment
4DNEXH64U44U
Bio Rep 3, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIH2QHU3I
read positions (bed)
1.16 GB
Experiment
4DNEXVFER2M4
Bio Rep 4, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIYUOINOO
read positions (bed)
1016.83 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXXFFTLF2
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI7MY7TFA
0.85
0.85
47.17m
Experiment
4DNEX79VU135
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI2Z233OR
0.88
0.88
78.91m
Experiment
4DNEXH64U44U
Bio Rep 3, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIH2QHU3I
0.83
0.83
70.96m
Experiment
4DNEXVFER2M4
Bio Rep 4, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIYUOINOO
0.9
0.9
60.88m