ExperimentSetReplicate

ExperimentSet4DNESTI1YC1H
released

2 biological replicates of Hi-C on G1E-ER4 cells in anaphase/telophase

   March 3rd, 2020 at 8:07pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESTI1YC1H
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI3W39SHF
438.62m
63.684%
27.143%
9.173%
Experiment
4DNEXH8AH6PF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIN5DX6QZ
230.61m
61.304%
31.181%
7.516%
Experiment
4DNEXHGNEL6Z
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFI8MSH7WJ
208.01m
66.323%
22.667%
11.01%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXH8AH6PF
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIT6KFP8B
375.45m
9.609%
22.243%
2.415%
4.31%
0.101%
Experiment
4DNEXHGNEL6Z
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI1A555G3
330.58m
10.439%
19.804%
1.968%
4.864%
0.097%