ExperimentSetReplicate

ExperimentSet4DNESTARWLPU
released
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in situ Hi-C on peripheral blood mononuclear lymphocytes of MCG035

   October 24th, 2024 at 10:15pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
MCG035 Peripheral blood monocytes
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESTARWLPU
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI4M7ZWJ4
914.53m
58.362%
22.692%
18.946%
Experiment
4DNEX6HTLHWU
Bio Rep 1, Tec Rep 1
in situ Hi-C on MCG035 Peripheral blood monocytes with MboI
File
Contact List-replicate (pairs)
4DNFI1ZAPZI2
1.01 billion
58.093%
22.163%
19.744%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESTARWLPU
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI7OTMEOX
None