ExperimentSetReplicate

ExperimentSet4DNEST7LSQLJ
released
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Replicates of RNA-Seq on mouse haploid ES cell line

   September 19th, 2018 at 11:32am
Source Publication
Cell-cycle dynamics of chromosomal organization at single-cell resolution.
Nagano T, Lubling Y, et al., Nature 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
H129-1
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXAUPNG1Q
Bio Rep 1, Tec Rep 1
RNA-seq on H129-1
File
Read Positions (bam)
4DNFIX5T986Y
4.35m
3.97m
Experiment
4DNEX3R6VLNV
Bio Rep 2, Tec Rep 1
RNA-seq on H129-1
File
Read Positions (bam)
4DNFICXJZFOC
7.3m
6.6m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXAUPNG1Q
Bio Rep 1, Tec Rep 1
RNA-seq on H129-1
File
Gene Expression (tsv)
4DNFI3A8WWCG
1.85m
19.68k
Experiment
4DNEX3R6VLNV
Bio Rep 2, Tec Rep 1
RNA-seq on H129-1
File
Gene Expression (tsv)
4DNFI4OUAMKV
3.07m
80.75k