ExperimentSetReplicate

ExperimentSet4DNESSTQIYDL
released
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RNA-seq on single positive CD4 T cells isolated from thymus

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
CD4-positive, alpha-beta thymocyte
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXDK5D8LA
Bio Rep 1, Tec Rep 1
RNA-seq on CD4-positive, alpha-beta thymocyte
File
Read Positions (bam)
4DNFI8L5138N
3.64m
3.41m
Experiment
4DNEXVVW2EJ7
Bio Rep 2, Tec Rep 1
RNA-seq on CD4-positive, alpha-beta thymocyte
File
Read Positions (bam)
4DNFIAVRUFWB
3.41m
3.19m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXDK5D8LA
Bio Rep 1, Tec Rep 1
RNA-seq on CD4-positive, alpha-beta thymocyte
File
Gene Expression (tsv)
4DNFIJTGN1PM
3.4m
2.32k
Experiment
4DNEXVVW2EJ7
Bio Rep 2, Tec Rep 1
RNA-seq on CD4-positive, alpha-beta thymocyte
File
Gene Expression (tsv)
4DNFIHSKILDS
3.26m
1.77k