ExperimentSetReplicate

ExperimentSet4DNESSSDVO27
released

Replicates of Hi-C on undifferentiated CyT49 human embryonic stem cells

   February 28th, 2020 at 2:11pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
CyT49 differentiated to stem cell
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESSSDVO27
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI3WK3QYQ
2.53 billion
59.162%
19.942%
20.895%
Experiment
4DNEX94DX4XP
Bio Rep 1, Tec Rep 1
in situ Hi-C on CyT49 differentiated to stem cell with MboI
File
Contact List-replicate (pairs)
4DNFI9VR75SS
1.47 billion
57.857%
21.733%
20.411%
Experiment
4DNEXFRAFIWZ
Bio Rep 2, Tec Rep 1
in situ Hi-C on CyT49 differentiated to stem cell with MboI
File
Contact List-replicate (pairs)
4DNFIKGQSUNZ
1.07 billion
60.952%
17.488%
21.56%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX94DX4XP
Bio Rep 1, Tec Rep 1
in situ Hi-C on CyT49 differentiated to stem cell with MboI
File
Alignments (bam)
4DNFIU9ZKAU5
3.01 billion
7.208%
10.226%
28.698%
5.162%
0.111%
Experiment
4DNEXFRAFIWZ
Bio Rep 2, Tec Rep 1
in situ Hi-C on CyT49 differentiated to stem cell with MboI
File
Alignments (bam)
4DNFIB9SZIQB
1.61 billion
7.663%
10.575%
9.874%
5.321%
0.141%