ExperimentSetReplicate

ExperimentSet4DNESSQ5RWCM
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RNA-seq on Mature Treg cells isolated from spleen

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - spleen - Foxp3+
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXLSVY7OY
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - spleen - Foxp3+
File
Read Positions (bam)
4DNFIEODRON9
3.2m
2.97m
Experiment
4DNEXGRNLLAZ
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - spleen - Foxp3+
File
Read Positions (bam)
4DNFI7N3WZ11
5.24m
4.84m
Experiment
4DNEX2FZNEIJ
Bio Rep 3, Tec Rep 1
RNA-seq on Treg - spleen - Foxp3+
File
Read Positions (bam)
4DNFIZ1QSAAE
3.34m
3.09m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXLSVY7OY
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - spleen - Foxp3+
File
Gene Expression (tsv)
4DNFIJBWEQRZ
3.44m
5.19k
Experiment
4DNEXGRNLLAZ
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - spleen - Foxp3+
File
Gene Expression (tsv)
4DNFIMOA2GXX
5.38m
13.05k
Experiment
4DNEX2FZNEIJ
Bio Rep 3, Tec Rep 1
RNA-seq on Treg - spleen - Foxp3+
File
Gene Expression (tsv)
4DNFIYRTCEOH
3.47m
7.97k