ExperimentSetReplicate

ExperimentSet4DNESSL62JQK
released

Small-scale in situ Hi-C on mouse ICM

   January 10th, 2020 at 3:45pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
tissue
Biosource 
inner cell mass
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

9 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESSL62JQK
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIS2ZP8V2
202.63m
56.232%
23.592%
20.176%
Experiment
4DNEXKOV3QWG
Bio Rep 1, Tec Rep 1
in situ Hi-C on inner cell mass with MboI
File
Contact List-replicate (pairs)
4DNFIQ2CLZI3
28.39m
60.919%
26.243%
12.838%
Experiment
4DNEXUMDIVVM
Bio Rep 2, Tec Rep 1
in situ Hi-C on inner cell mass with MboI
File
Contact List-replicate (pairs)
4DNFIS6Q1NMW
71.08m
54.098%
26.499%
19.404%
Experiment
4DNEX8SIN2FI
Bio Rep 3, Tec Rep 1
in situ Hi-C on inner cell mass with MboI
File
Contact List-replicate (pairs)
4DNFIAYP2927
103.16m
56.413%
20.86%
22.727%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKOV3QWG
Bio Rep 1, Tec Rep 1
in situ Hi-C on inner cell mass with MboI
File
Alignments (bam)
4DNFITIVUDSB
264.97m
10.291%
10.367%
51.045%
17.581%
0.031%
Experiment
4DNEXUMDIVVM
Bio Rep 2, Tec Rep 1
in situ Hi-C on inner cell mass with MboI
File
Alignments (bam)
4DNFISBS6K1G
277.85m
10.911%
8.875%
30.318%
24.315%
0.098%
Experiment
4DNEX8SIN2FI
Bio Rep 3, Tec Rep 1
in situ Hi-C on inner cell mass with MboI
File
Alignments (bam)
4DNFIRK9XJFQ
234.5m
13.782%
8.362%
11.076%
22.787%
0.153%