ExperimentSetReplicate

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ExperimentSet4DNESSCD61DP
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 10 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXWC6W1U8
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI1S2IEJ9
read positions (bam)
3.44 GB
File
4DNFI222R8SU
read counts (bw)
201.98 MB
File
4DNFIK7866WV
gene expression (tsv)
10.57 MB
File
4DNFI9XZFKFT
isoform expression (tsv)
30.05 MB
Experiment
4DNEXN9IWY4N
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI41CA1NX
read positions (bam)
3.6 GB
File
4DNFIW9BIDTY
read counts (bw)
233.3 MB
File
4DNFI1WA2DLW
gene expression (tsv)
10.56 MB
File
4DNFII76NV33
isoform expression (tsv)
30.02 MB
Experiment
4DNEX291WPP3
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI44WHJTE
read positions (bam)
3.25 GB
File
4DNFIPGZHHB1
read counts (bw)
190.83 MB
File
4DNFI5UD9WFO
gene expression (tsv)
10.56 MB
File
4DNFITR3DOGN
isoform expression (tsv)
30.03 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXWC6W1U8
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI1S2IEJ9
50.83m
44.9m
Experiment
4DNEXN9IWY4N
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI41CA1NX
51.81m
45.69m
Experiment
4DNEX291WPP3
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI44WHJTE
46.66m
40.89m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXWC6W1U8
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIK7866WV
19.47m
66
Experiment
4DNEXN9IWY4N
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI1WA2DLW
16.75m
83
Experiment
4DNEX291WPP3
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI5UD9WFO
14.61m
48