ExperimentSetReplicate

ExperimentSet4DNESS36V7MM
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ChIP-seq for CTCF on 30 hour activated B cells, treated with hydroxyurea to inhibit DNA replication

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
B cell derived cell line
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Ctcf mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX8J293O3
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFI3MQ613W
0.83
0.84
21.47m
Experiment
4DNEXNCAE2LA
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFIIYZKQHA
0.77
0.79
26.78m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESS36V7MM
Multiple Experiments
File
Peaks (bigbed)
4DNFIJR8V778
92.01k
1.04
1.17
0.34