ExperimentSetReplicate

ExperimentSet4DNESRYXX7HJ
released
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RNA-seq on wild-type WTC-11 iPSC undifferentiated

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXMXL8PDV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11
File
Read Positions (bam)
4DNFIQAQPIQ2
53.91m
47.19m
Experiment
4DNEX1GSC53V
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11
File
Read Positions (bam)
4DNFIETNQ8YI
46.48m
40.71m
Experiment
4DNEXKHCTDXO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11
File
Read Positions (bam)
4DNFIR1KGRV6
50m
43.06m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXMXL8PDV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11
File
Gene Expression (tsv)
4DNFIB3RUPZ2
19.93m
174
Experiment
4DNEX1GSC53V
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11
File
Gene Expression (tsv)
4DNFIZXCGCL9
21.16m
177
Experiment
4DNEXKHCTDXO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11
File
Gene Expression (tsv)
4DNFIZB1HTO1
21.43m
158