ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESRYXX7HJ
released
View JSON

RNA-seq on wild-type WTC-11 iPSC undifferentiated

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Experiment
4DNEXMXL8PDV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11
File
4DNFIQAQPIQ2
read positions (bam)
3.6 GB
File
4DNFIJ8UOTID
read counts (bw)
204.93 MB
File
4DNFIB3RUPZ2
gene expression (tsv)
10.57 MB
File
4DNFIZXN7QIN
isoform expression (tsv)
30.08 MB
Experiment
4DNEX1GSC53V
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11
File
4DNFIETNQ8YI
read positions (bam)
3.03 GB
File
4DNFIUES82JQ
read counts (bw)
161.53 MB
File
4DNFIZXCGCL9
gene expression (tsv)
10.58 MB
File
4DNFIA6BGDKA
isoform expression (tsv)
30.09 MB
Experiment
4DNEXKHCTDXO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11
File
4DNFIR1KGRV6
read positions (bam)
3.5 GB
File
4DNFI4C4NCRD
read counts (bw)
182.32 MB
File
4DNFIZB1HTO1
gene expression (tsv)
10.58 MB
File
4DNFIBNV52WX
isoform expression (tsv)
30.07 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXMXL8PDV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11
File
Read Positions (bam)
4DNFIQAQPIQ2
53.91m
47.19m
Experiment
4DNEX1GSC53V
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11
File
Read Positions (bam)
4DNFIETNQ8YI
46.48m
40.71m
Experiment
4DNEXKHCTDXO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11
File
Read Positions (bam)
4DNFIR1KGRV6
50m
43.06m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXMXL8PDV
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11
File
Gene Expression (tsv)
4DNFIB3RUPZ2
19.93m
174
Experiment
4DNEX1GSC53V
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11
File
Gene Expression (tsv)
4DNFIZXCGCL9
21.16m
177
Experiment
4DNEXKHCTDXO
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11
File
Gene Expression (tsv)
4DNFIZB1HTO1
21.43m
158