ExperimentSetReplicate

ExperimentSet4DNESRQDNG61
released

Replicates of GAM on F123xCAST mouse ES cells

   December 13th, 2019 at 3:02am

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Batch Quality Information for GAM libraries (NP fastq files) in this Dataset  


NOTE The excel workbook downloadable from this page contains information that can be used to evaluate the quality of the GAM libraries linked to this dataset.

The workbook consists of 2 sheets. The first provides descriptions and terms used in the second and highlights those that may be used to evaluate quality of the libraries. The second sheet provides information on each individual GAM library linked to this dataset.
Each library corresponds to a single FastQ file that can be identified using the provided Sample_ID in the first column.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

2234 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSTO156AZ
Bio Replicate 1
Experiment
4DNEX1KG9YVX
Tech Replicate 1
File
173.98 MB
35-75
  Pass
3.43m
File
309.56 MB
35-75
  Pass
6.34m
File
108.08 MB
35-75
  Pass
2.42m
File
58.38 MB
35-75
  Pass
1.2m
File
198.19 MB
35-75
  Pass
4.08m
File
221.13 MB
35-75
  Pass
4.55m
File
187.4 MB
35-75
  Pass
3.91m
Show 100 More Files (Total 1904 Files to Show)
Biosample
4DNBSOWGV1DJ
Bio Replicate 2
Experiment
4DNEXOWEU1HW
Tech Replicate 1
File
162.57 MB
35-75
  Pass
3.5m
File
144.71 MB
35-75
  Pass
3.06m
File
128.83 MB
35-75
  Pass
2.7m
File
125.63 MB
35-75
  Pass
2.62m
File
107.21 MB
35-75
  Pass
2.23m
File
102.71 MB
35-75
  Pass
2.14m
File
97.23 MB
35-75
  Pass
2.01m
Show 100 More Files (Total 316 Files to Show)