ExperimentSet4DNESRJ8KV4Q
released
September 15th, 2017 at 3:38pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021
WARNING: non-optimal cross-linking conditions
This dataset may be obtained with non-optimal cross-linking conditions (as demonstrated in the paper) and is reported here for documentation purposes.
Users interested in using Hi-C or Micro-C data from this project for alternative analyses are advised to use only datasets generated with the optimal cross-linking conditions of 1% Formaldehyde + 3mM DSG. The study authors further advise users to carefully select digestion enzymes and library size to fit their needs. A list of preferred datasets for re-use is provided.
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
stem cells
Sample
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: DpnII
12 Processed Files
Experiment
File
File Type
File Size
Notes
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details