ExperimentSetReplicate

ExperimentSet4DNESRFOIKMO
released
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RNA-seq on in vivo purified from mouse E14.5 neocortex cortical neurons

   August 12th, 2019 at 2:59pm
Source Publication
Multiscale 3D Genome Rewiring during Mouse Neural Development.
Bonev B, Mendelson Cohen N, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
primary somatosensory cortex (Hes5-GFP/Dcx-mRFP)
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX2K1NZ4D
Bio Rep 1, Tec Rep 1
RNA-seq on primary somatosensory cortex (Hes5-GFP/Dcx-mRFP)
File
Read Positions (bam)
4DNFIOUM9S7Q
58.55m
54.12m
Experiment
4DNEXRADIC17
Bio Rep 2, Tec Rep 1
RNA-seq on primary somatosensory cortex (Hes5-GFP/Dcx-mRFP)
File
Read Positions (bam)
4DNFIT8GGT3Q
43.12m
40.16m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX2K1NZ4D
Bio Rep 1, Tec Rep 1
RNA-seq on primary somatosensory cortex (Hes5-GFP/Dcx-mRFP)
File
Gene Expression (tsv)
4DNFIYF5FJBV
57.91m
56.7k
Experiment
4DNEXRADIC17
Bio Rep 2, Tec Rep 1
RNA-seq on primary somatosensory cortex (Hes5-GFP/Dcx-mRFP)
File
Gene Expression (tsv)
4DNFICFMGD6G
39.42m
109.45k