ExperimentSetReplicate

ExperimentSet4DNESRAGM5JU
released
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in situ Hi-C on cerebellar granule neurons with etv1 sgRNA and etv1 variant2 rescue isolated using FANS at day 14 after in vivo electroporation from dCas9-KRAB mouse postnatal day 20

   August 13th, 2025 at 3:35pm

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cerebellar granule neuron - 14 days old
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
Transient Transfection
Assay Details 
Enzyme: MboI

14 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESRAGM5JU
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIU6E6KL4
571.92m
58.61%
17.563%
23.827%
Experiment
4DNEXZ793HBN
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIELO42R9
145.18m
55.081%
19.75%
25.169%
Experiment
4DNEX4Q9NK45
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIESITJLG
179.89m
56.754%
19.019%
24.228%
Experiment
4DNEXSVM1ODV
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFILQM7DFB
140.11m
56.222%
19.41%
24.368%
Experiment
4DNEX63R2E56
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIDE74NGI
87.89m
64.182%
11.966%
23.852%
Experiment
4DNEXMP8RDPB
Bio Rep 5, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI426H7FZ
83.27m
63.54%
12.198%
24.262%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESRAGM5JU
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIBQWCEMM
None