ExperimentSetReplicate

ExperimentSet4DNESR9M2CET
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Multiplexed FISH in human chromosome 22

   September 29th, 2023 at 6:04pm
Source Publication
Spatial organization of chromatin domains and compartments in single chromosomes.
Wang S, Su JH, et al., Science (New York, N.Y.) 2016

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
IMR-90
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 14 TADs on Chr22 #1-14, 13 TADs on Chr22 #15-27, 27 TADs on Chr22 #1-27
Channel
Imaging Rounds
Path
 
ch00
1-14
14 TADs on Chr22 #1-14 targeted by Alexa Fluor 647-labeled imaging oligos
ch01
1-13
13 TADs on Chr22 #15-27 targeted by ATTO 565-labeled imaging oligos
ch02
0
27 TADs on Chr22 #1-27 targeted by Alexa Fluor 647-labeled imaging oligos
ch03
-
fluorophore-labeled fiducial beads

1 Processed File

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESR9M2CET
Multiple Experiments
File
4DNFIXRYL1SK
FOF-CT - DNA-spot/trace core (csv)
224.74 kB
Experiment
File
File Type
File Size
Experiment
4DNEX37OCB9M
Bio Rep 1, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEXTQAH4ES
Bio Rep 2, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEXS362D5E
Bio Rep 3, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEXTDQVVZP
Bio Rep 4, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEXQNLFO6N
Bio Rep 5, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Show 2 More