ExperimentSetReplicate

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ExperimentSet4DNESR9IH796
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESR9IH796
Multiple Experiments
File
4DNFI15PLAJT
contact list-combined (pairs)
12.43 GB
File
4DNFIH6ANSX9
contact matrix (hic)
4.51 GB
File
4DNFI1LYV4VR
contact matrix (mcool)
3.02 GB
File
4DNFI16SMBLT
compartments (bw)
203.6 kB
File
4DNFI3JKGV7L
boundaries (bed)
162.38 kB
File
4DNFIRT8CIS3
insulation score-diamond (bw)
7.94 MB
Experiment
4DNEX46YLLC2
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
4DNFIPIEQHKR
alignments (bam)
110.27 GB
File
4DNFIR7TS715
contact list-replicate (pairs)
6.23 GB
Experiment
4DNEXTJRXEGU
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
4DNFI4J3IYF5
alignments (bam)
129.94 GB
File
4DNFIQ2PMZYA
contact list-replicate (pairs)
7.38 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESR9IH796
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI15PLAJT
720.86m
44.1%
39.002%
16.897%
Experiment
4DNEX46YLLC2
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIR7TS715
352.8m
43.596%
38.909%
17.494%
Experiment
4DNEXTJRXEGU
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIQ2PMZYA
418.9m
44.523%
37.672%
17.806%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESR9IH796
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI1LYV4VR
None