ExperimentSetReplicate

ExperimentSet4DNESR9IH796
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESR9IH796
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI15PLAJT
720.86m
44.1%
39.002%
16.897%
Experiment
4DNEX46YLLC2
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIR7TS715
352.8m
43.596%
38.909%
17.494%
Experiment
4DNEXTJRXEGU
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIQ2PMZYA
418.9m
44.523%
37.672%
17.806%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESR9IH796
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI1LYV4VR
None