ExperimentSetReplicate

ExperimentSet4DNESQW1ETDQ
released
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in situ Hi-C on DMSO treated hTert-RPE1 FKBP12F36V-Rad21 clone B1 - 24 hr

   October 17th, 2024 at 9:16pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-RAD21 hTERT-RPE-1 - clone B1
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: Arima - A1, A2

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESQW1ETDQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWU4I7O7
278.32m
52.763%
38.476%
8.76%
Experiment
4DNEXBIGIXQF
Bio Rep 1, Tec Rep 1
in situ Hi-C on dTAG-RAD21 hTERT-RPE-1 - clone B1 with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFI2WHZ5SV
297.15m
52.633%
37.945%
9.422%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQW1ETDQ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI13QP61U
None