ExperimentSetReplicate

ExperimentSet4DNESQS2J929
released

Replicates CUT&RUN experiments on GM12878 cells using H3K4me2 (Upstate 07-030) with a digestion time of 9min

   June 20th, 2019 at 10:09pm

NOTE: Processed files temporarily restricted  


Due to an issue with the 4DN standardized pipeline for CUT&RUN some of the recently released files generated by this pipeline contain additional formatting or may have been incorrectly truncated. This not only interferes with Higlass visualization but may also lead to incorrect interpretation of results. We have restricted access to the files as we work to correct these errors. Please use caution if you have already obtained any of these files and plan to utilize them in your analyses.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me2

3 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXBAUXQNM
Bio Rep 1, Tec Rep 1
CUT&RUN against H3K4me2 on GM12878 (Tier 1)
read positions (bam)
3.63 GB
File
no view permissions
-
Experiment
4DNEXDFVVIOF
Bio Rep 2, Tec Rep 1
CUT&RUN against H3K4me2 on GM12878 (Tier 1)
read positions (bam)
3.76 GB
File
no view permissions
-