ExperimentSetReplicate

ExperimentSet4DNESQR3D9XM
released
View JSON

ChIA-Drop in GM12878 using CTCF antibody

   June 28th, 2024 at 4:36pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Note: This Item Supercedes - 4DNESX18HS2V  

This experiment set supercedes 4DNESX18HS2V because new biological replicates were added.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM12878
Experiment Type(s) 
ChIA-Drop
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Target: CTCF protein
  2. Target: CTCF gene

36 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSRVR3G1B
Bio Replicate 1
Experiment
4DNEXWG5BUES
Tech Replicate 1
Pair
File
4DNFIPNLS1FD
3.74 GB
151
  Pass
53.81m
File
4DNFI5Z7UQ4X
3.89 GB
151
  Pass
53.81m
Biosample
4DNBS5GYGLDL
Bio Replicate 2
Experiment
4DNEXGVWAU8S
Tech Replicate 1
Pair
File
4DNFIVWA6UNO
4.45 GB
151
  Pass
64m
File
4DNFI35ZHFS7
4.65 GB
151
  Pass
64m
Biosample
4DNBSKQYH8QA
Bio Replicate 3
Experiment
4DNEXGGI3ZHT
Tech Replicate 1
Pair
File
4DNFIPSLPD4N
6.14 GB
151
  Pass
87.72m
File
4DNFIUUDC4CR
6.4 GB
151
  Pass
87.72m
Show 15 More Biosamples with 15 Experiments