ExperimentSetReplicate

ExperimentSet4DNESQJCQZRV
released
View JSON

RNA FISH of Hbb-b1, Tal1, and Slc25a37 intronic regions on 24h differentiated cells

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:7:103826534-103827928 mouse region, GRCm38:4:115056426-115071755 mouse region, GRCm38:14:69241851-69285103 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:7:103826534-103827928 mouse region targeted by Alexa Fluor 594-labeled custom oligos
ch02
GRCm38:4:115056426-115071755 mouse region targeted by Cy5-labeled custom oligos
ch03
GRCm38:14:69241851-69285103 mouse region targeted by Cy3-labeled custom oligos

18 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXJUO6EPK
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI1HC56J1
csv
16 kB
File
4DNFIKIXEWIS
coordinates (csv)
3.73 kB
File
4DNFISVLE72B
csv
25.33 kB
File
4DNFIVPY2THT
coordinates (csv)
5.51 kB
File
4DNFI9CKAXEK
csv
18.61 kB
File
4DNFI9MKPAJ1
coordinates (csv)
5.23 kB
Experiment
4DNEX9LC7T2K
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIBXOH9B1
csv
19.51 kB
File
4DNFIGMDB5MV
coordinates (csv)
4.62 kB
File
4DNFICUDCZTX
csv
30.78 kB
File
4DNFIARORR7U
coordinates (csv)
7.4 kB
File
4DNFITVFWZ1W
csv
17.35 kB
File
4DNFIB78HZDO
coordinates (csv)
4.51 kB
Experiment
4DNEXNYAAQRV
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIMOIRQXE
csv
12.92 kB
File
4DNFI3BVGNPA
coordinates (csv)
3.37 kB
File
4DNFI8RLF17S
csv
21.83 kB
File
4DNFIJUCVJ37
coordinates (csv)
4.93 kB
File
4DNFIKU8OQ92
csv
16.79 kB
File
4DNFIOE1TVSG
coordinates (csv)
4.54 kB