ExperimentSetReplicate

ExperimentSet4DNESQI27WR2
released
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HiC experiment done on endothelial cell of hepatic sinusoid (HHSEC)

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
endothelial cell of hepatic sinusoid
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESQI27WR2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIAM5MOTC
458.94m
59.86%
22.147%
17.993%
Experiment
4DNEXA3G97LF
Bio Rep 2, Tec Rep 1
Dilution Hi-C on endothelial cell of hepatic sinusoid with HindIII
File
Contact List-replicate (pairs)
4DNFIEKCLUSM
226.45m
59.278%
20.75%
19.972%
Experiment
4DNEXEA2KUD6
Bio Rep 1, Tec Rep 1
Dilution Hi-C on endothelial cell of hepatic sinusoid with HindIII
File
Contact List-replicate (pairs)
4DNFIHT36NUP
232.49m
60.427%
23.507%
16.066%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQI27WR2
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIZPPA9HQ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXA3G97LF
Bio Rep 2, Tec Rep 1
Dilution Hi-C on endothelial cell of hepatic sinusoid with HindIII
File
Alignments (bam)
4DNFIWK1E9TL
366.68m
13.285%
13.787%
11.171%
0.002%
0.081%
Experiment
4DNEXEA2KUD6
Bio Rep 1, Tec Rep 1
Dilution Hi-C on endothelial cell of hepatic sinusoid with HindIII
File
Alignments (bam)
4DNFIVHHH1PX
363.53m
12.469%
13.944%
9.633%
0.001%
0.074%