ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESQ9FZ4Z6
released
View JSON

Input control for WAPL ChIP-seq on WT hTert-RPE-1

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
RPE-hTERT (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXV9PITTH
Bio Rep 1, Tec Rep 1
ChIP-seq on RPE-hTERT (Tier 2)
File
4DNFIBSQT3ZQ
read positions (bed)
523.82 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXV9PITTH
Bio Rep 1, Tec Rep 1
ChIP-seq on RPE-hTERT (Tier 2)
File
Read Positions (bed)
4DNFIBSQT3ZQ
0.82
0.79
31.48m